Young puppies can’t hold their bowels & bladders for long. If you come home to find that they’ve had an accident in there it’s quite possible that they can’t hold it that long. Generally puppies can hold their bladder for about one hour per month of age. So your 3 month old pup can probably only hold their bladder for about 3 hours. If you’re going to be away at work for long periods of time see if you can get a neighbor, relative or dog sitter to come over to let your pup out during the day.
There also behavioral issues that can interfere with successful training. Urine marking is a normal dog behavior in which the animal will hike their leg and mark a certain area or object. With separation anxiety, the puppy may have accidents inside when you leave them at home alone. Some puppies become nervous or upset when their owners are away. Other puppies have a submissive or excitement urination problem. This causes them to spontaneously urinate during certain activities. Discuss these possibilities with your veterinarian or trainer if you're not getting positive results.[20]
You may also notice common behavior problems in your dog such as jumping up, barking, or even aggression. The best way to correct any misbehavior is to interrupt it. Shift your dog's attention to something positive. Try running through cues that your dog has mastered followed by rewards. Keep your demeanor cool and confident, and be clear about what you mean. 

You may also notice common behavior problems in your dog such as jumping up, barking, or even aggression. The best way to correct any misbehavior is to interrupt it. Shift your dog's attention to something positive. Try running through cues that your dog has mastered followed by rewards. Keep your demeanor cool and confident, and be clear about what you mean.
Though it differs by each individual dog this is the time when most will come up with their own little way of letting you know they’ve got to go. It might be crying at your feet, ringing a bell you’ve set up or waiting at the door — just be sure to pay attention to these signals & follow up. Once your dog knows how to get your attention when he’s got to go you can relax a little and congratulate yourself on a job well done.
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