One of the biggest mistakes new puppy owners make is expecting their puppy to hold it for longer than he is physically capable. The general guideline for puppy “hold times” is that each month of age equates to an hour of “hold time,” so a two-month-old puppy can hold it for roughly two hours. There are exceptions to the rule; your puppy should be able to hold it for slightly longer period of time at night as he gets older and you pup will need potty breaks more frequently when he’s playing.
Consistency is crucial. This may mean taking time off work to be there to take the pup outside every 20-30 minutes when they are awake. Crate training will also help the 'penny drop' as it teaches the pup to hold on until taken outside. Then, be sure to stay with the pup in the yard so you are there to reinforce how clever they are when they do go in the right place.
Often, the sit command will be one of the easiest for your dog to learn first. Next, you can train your dog to lie down. At the same time, work on teaching your dog to stay. In addition, your dog should be trained to come when called as soon as possible. This is one of the most important fundamental commands. Once your dog has mastered these dog obedience basics, you can move on to fun tricks and advanced commands.

Just because your new dog is old enough that he should know where to potty doesn’t mean that he actually does. An adult dog has the necessary muscle control to hold it for longer periods of time, but if no one ever taught him the potty training rules then he’s the equivalent of a brand new puppy. Age should not be equated with housetraining prowess, so it’s a good idea to treat any dog new to your home as if he’s still learning the potty training ropes.
It's not so much the dog doesn't listen, more that he doesn't understand what you want him to do. Go back to basics and don't punish him when he toilets indoors. Double your vigilance and take every opportunity to put him outside to toilet. The crucial thing is to be present when he does toilet in the correct place, so that you can reward him. This makes him keener to repeat the performance to get another treat. Conversely, if you have been telling him off for indoor accidents he may already feel inhibited about going to the toilet in your presence, including when he goes outdoors. This is one reason why it's important not to punish for inappropriate toileting.
Young puppies can’t hold their bowels & bladders for long. If you come home to find that they’ve had an accident in there it’s quite possible that they can’t hold it that long. Generally puppies can hold their bladder for about one hour per month of age. So your 3 month old pup can probably only hold their bladder for about 3 hours. If you’re going to be away at work for long periods of time see if you can get a neighbor, relative or dog sitter to come over to let your pup out during the day.
Success is usually attained in small steps. Training sessions with your dog should last 10 to 15 minutes, two to three times per day. This is especially true for puppies because of their very short attention spans. Longer sessions can cause an adult dog to become bored. Start by teaching basic commands. Try to stick with one action per training session so your dog does not get confused.

There also behavioral issues that can interfere with successful training. Urine marking is a normal dog behavior in which the animal will hike their leg and mark a certain area or object. With separation anxiety, the puppy may have accidents inside when you leave them at home alone. Some puppies become nervous or upset when their owners are away. Other puppies have a submissive or excitement urination problem. This causes them to spontaneously urinate during certain activities. Discuss these possibilities with your veterinarian or trainer if you're not getting positive results.[20] 

Introduce your new pup to its new home, family and their role. Just like when you are new to a place or group, your new pet may be bursting with curiosity, excitement, fear or joy. Now is the best time to lay out the foundation for a good and pleasant relationship with your pet. For a puppy to settle in and learn to trust and respect you and everyone at home, it is very important to establish your expectations of your puppy and be consistent with them.
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